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Hi,Pls follow the link.It is very cleear for building the code from SVN(http://forums.alfresco.com/en/viewtopic.php?f=10&t=15336).
Also see some help here (http://www.betaquest.com/2010/07/tutorial-installing-alfresco-community-3-3g-on-centos-5-5-x64-with-mysql-and-x/)catalina.bat and catalina.sh you will find in TOMCAT/bin folder.
As per my understanding on "debugging in Eclipse" means your codebase and the developement enc,servers in one machine.Remote debugging means your server is in remote and dev env in some other machine.
If you have your dev env,eclipse and the server in one machine, better you do the server configuration instead of Remote debugging.There is no difference but the different way of debugging
exec "$PRGDIR"/"$EXECUTABLE" start "$@"
exec "$PRGDIR"/"$EXECUTABLE" jpda start "$@"